Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/MG/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for MG cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: MG
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_MG_chn_mc float

zemke2023Conserved_Macaque_MG_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_MG_chn_mc [0, 1]
n
2,776,260,920
mean
0.00789
sd
0.0157

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 277626092093.43% 38595532
chr1 219419992 98.12% 3152426
chr2 192304800 98.02% 2688232
chr3 181871697 98.16% 2549460
chr4 166150850 97.76% 2323225
chr5 183793142 98.12% 2458101
chr6 175164250 97.81% 2419937
chr7 166027314 97.74% 2363477
chr8 141365950 97.04% 2000785
chr9 129884300 96.84% 1868492
chr10 94724350 95.18% 1424012
chr11 129353136 97.21% 1825295
chr12 127385600 97.96% 1774065
chr13 106377130 97.83% 1518211
chr14 124474950 97.20% 1789442
chr15 109017300 96.23% 1545703
chr16 76342214 95.87% 1140871
chr17 92443700 96.87% 1261035
chr18 72405850 97.22% 1018940
chr19 54696150 93.79% 816122
chr20 74994895 97.22% 1119958
chrM 3800 22.94% 64
chrX 147795500 96.35% 1441195
chrY 10264050 87.33% 96484
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38595532 42 2550 71.93 50
global segment-length histogram

Files

Filename Size md5
MG.CHN-both.bedgraph.gz 265.22 MB 8caeb670a5761e297deb127bdbcfd160
MG.CHN-both.bedgraph.gz.tbi 537.37 KB a7b7cf3daeb4815b71f003f4898c4ffc
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.12 KB f98e47bc23a89ab9b37d8433804e0f1a
statistics/