Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/NP/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for NP cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: NP
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_NP_chn_mc float

zemke2023Conserved_Macaque_NP_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_NP_chn_mc [0, 1]
n
2,748,415,523
mean
0.0505
sd
0.0617

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 274841552392.50% 47510458
chr1 217748892 97.38% 3803366
chr2 190771450 97.23% 3343093
chr3 180478147 97.40% 3164826
chr4 164801700 96.96% 2890423
chr5 182235642 97.29% 3166361
chr6 173701750 96.99% 3023687
chr7 164635164 96.92% 2872443
chr8 140160070 96.21% 2447998
chr9 128749600 95.99% 2265949
chr10 93941050 94.40% 1665933
chr11 128251100 96.38% 2213288
chr12 126411500 97.21% 2214343
chr13 105548950 97.07% 1848177
chr14 123362006 96.33% 2158919
chr15 108121700 95.44% 1897932
chr16 75576864 94.91% 1310963
chr17 91621250 96.01% 1597578
chr18 71864893 96.50% 1276565
chr19 53905950 92.44% 842040
chr20 74394395 96.44% 1300957
chrM 3500 21.13% 56
chrX 142236100 92.73% 2082271
chrY 9893850 84.18% 123290
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47510458 6 2500 57.85 50
global segment-length histogram

Files

Filename Size md5
NP.CHN-both.bedgraph.gz 328.24 MB 4f2ba5b7fc7cdbc3aa5dfe8b3e4a4a5f
NP.CHN-both.bedgraph.gz.tbi 549.02 KB 038d6d9111c1887eabfade3bb52a3e91
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.12 KB 86f48184e528582b7c157220bc63a8ca
statistics/