Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/ODC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for ODC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: ODC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_ODC_chn_mc float

zemke2023Conserved_Macaque_ODC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_ODC_chn_mc [0, 1]
n
2,794,909,969
mean
0.0115
sd
0.0123

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 279490996994.06% 55302066
chr1 220627342 98.66% 4377951
chr2 193329750 98.54% 3834142
chr3 182871647 98.70% 3626509
chr4 167185750 98.37% 3311916
chr5 184794042 98.65% 3659470
chr6 176213900 98.40% 3491292
chr7 167093264 98.37% 3311447
chr8 142190050 97.60% 2819389
chr9 130732600 97.47% 2590750
chr10 95367250 95.83% 1892028
chr11 130192036 97.84% 2579306
chr12 128022650 98.45% 2540330
chr13 106948830 98.36% 2122399
chr14 125483856 97.99% 2484025
chr15 109668700 96.81% 2174995
chr16 77013414 96.72% 1525063
chr17 93141200 97.60% 1840549
chr18 72785343 97.73% 1443734
chr19 55505150 95.18% 1090489
chr20 75501945 97.88% 1497532
chrM 8100 48.90% 94
chrX 149772050 97.64% 2888373
chrY 10461100 89.00% 200283
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55302066 6 1150 50.54 50
global segment-length histogram

Files

Filename Size md5
ODC.CHN-both.bedgraph.gz 446.81 MB 3312b6fc2383002a6d2c1e1abec67f70
ODC.CHN-both.bedgraph.gz.tbi 564.88 KB e8278289a479f3065bec71ee9c755dea
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.12 KB d6afe4aa5a2a4af6e68d64772ca245b2
statistics/