Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/OPC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for OPC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: OPC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_OPC_chn_mc float

zemke2023Conserved_Macaque_OPC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_OPC_chn_mc [0, 1]
n
2,775,755,226
mean
0.00844
sd
0.0168

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 277575522693.42% 38194658
chr1 219401592 98.11% 3115802
chr2 192273750 98.00% 2678843
chr3 181866097 98.15% 2540668
chr4 166135750 97.75% 2285313
chr5 183765742 98.10% 2422941
chr6 175140700 97.80% 2386607
chr7 166019364 97.73% 2343975
chr8 141333350 97.02% 1973690
chr9 129862750 96.82% 1852319
chr10 94710850 95.17% 1426246
chr11 129330236 97.19% 1792569
chr12 127362650 97.94% 1758418
chr13 106356480 97.81% 1511438
chr14 124445906 97.18% 1774883
chr15 108983500 96.20% 1546603
chr16 76336064 95.87% 1132831
chr17 92462100 96.89% 1240671
chr18 72392500 97.21% 1018752
chr19 54717650 93.83% 799604
chr20 74981445 97.20% 1112909
chrM 4600 27.77% 61
chrX 147613750 96.23% 1383723
chrY 10258400 87.28% 95792
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38194658 14 2300 72.67 50
global segment-length histogram

Files

Filename Size md5
OPC.CHN-both.bedgraph.gz 261.67 MB a4f5db59a86b994889b7460ce38e6744
OPC.CHN-both.bedgraph.gz.tbi 536.52 KB 2a945dbe03a47e295dbb315d1b5335e1
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.12 KB 809cd63d0b89f89675be997e1951181e
statistics/