Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/Pvalb-BC/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for Pvalb-BC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Pvalb-BC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_Pvalb-BC_cgn_mc float

zemke2023Conserved_Macaque_Pvalb-BC_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_Pvalb-BC_cgn_mc [0, 1]
n
962,723,289
mean
0.862
sd
0.237

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 96272328932.40% 18282835
chr1 77679150 34.74% 1477504
chr2 59789850 30.47% 1137810
chr3 63898000 34.49% 1214659
chr4 53445100 31.45% 1015737
chr5 53994300 28.83% 1027530
chr6 54697900 30.54% 1040285
chr7 58443400 34.41% 1110790
chr8 46696550 32.05% 889852
chr9 47033850 35.07% 893575
chr10 41931350 42.13% 797749
chr11 45306650 34.05% 861799
chr12 40702900 31.30% 774057
chr13 37247350 34.25% 708357
chr14 43436806 33.92% 826428
chr15 38858050 34.30% 738876
chr16 35655950 44.78% 678510
chr17 29308600 30.71% 556897
chr18 24713850 33.18% 469447
chr19 29883133 51.24% 573703
chr20 33025100 42.81% 630386
chrM 2850 17.21% 49
chrX 44138850 28.78% 804962
chrY 2833750 24.11% 53873
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18282835 33 800 52.66 50
global segment-length histogram

Files

Filename Size md5
Pvalb-BC.CGN-both.bedgraph.gz 127.78 MB e17f5b475cedc972b2600ecc74f3990b
Pvalb-BC.CGN-both.bedgraph.gz.tbi 604.41 KB fe2d9851cb8661e6554056770a67ebf5
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.15 KB a3fd203564b26130029ec669a2da01c9
statistics/