Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/Pvalb-BC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for Pvalb-BC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Pvalb-BC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_Pvalb-BC_chn_mc float

zemke2023Conserved_Macaque_Pvalb-BC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_Pvalb-BC_chn_mc [0, 1]
n
2,788,712,669
mean
0.0571
sd
0.0507

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 278871266993.85% 55274626
chr1 220239392 98.49% 4373931
chr2 192972150 98.36% 3832188
chr3 182565647 98.53% 3626292
chr4 166824650 98.15% 3311386
chr5 184456542 98.47% 3664220
chr6 175862750 98.20% 3490919
chr7 166750064 98.16% 3308360
chr8 141891600 97.40% 2817082
chr9 130437350 97.25% 2587730
chr10 95153000 95.61% 1888401
chr11 129908486 97.63% 2577715
chr12 127801100 98.28% 2538749
chr13 106745180 98.17% 2119804
chr14 125129356 97.71% 2481611
chr15 109436050 96.60% 2172340
chr16 76782814 96.43% 1522256
chr17 92934250 97.38% 1843882
chr18 72670193 97.58% 1443606
chr19 55243000 94.73% 1079507
chr20 75317645 97.64% 1493618
chrM 5150 31.09% 77
chrX 149197450 97.27% 2907877
chrY 10388850 88.39% 193075
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55274626 6 1100 50.45 50
global segment-length histogram

Files

Filename Size md5
Pvalb-BC.CHN-both.bedgraph.gz 442.22 MB 8e88b93ec3bd3c8931f679ad4e996e95
Pvalb-BC.CHN-both.bedgraph.gz.tbi 563.51 KB 9bd0b68db86cf97df8d9243314d8a210
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.15 KB c4f19daecfe366666da25b03d760ceb2
statistics/