Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/Pvalb-ChC/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for Pvalb-ChC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Pvalb-ChC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_Pvalb-ChC_cgn_mc float

zemke2023Conserved_Macaque_Pvalb-ChC_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_Pvalb-ChC_cgn_mc [0, 1]
n
914,210,833
mean
0.852
sd
0.279

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 91421083330.77% 14250562
chr1 74282100 33.22% 1152816
chr2 56962650 29.03% 901503
chr3 61036250 32.94% 949258
chr4 50902350 29.95% 800054
chr5 51437750 27.46% 823733
chr6 52147100 29.12% 824247
chr7 55744750 32.82% 867849
chr8 44599250 30.61% 704996
chr9 44989450 33.54% 693013
chr10 40194950 40.39% 605907
chr11 43173550 32.45% 674547
chr12 38896050 29.91% 610566
chr13 35685600 32.82% 554870
chr14 41440500 32.36% 648340
chr15 37132900 32.78% 573409
chr16 33987650 42.68% 511540
chr17 27879250 29.21% 439734
chr18 23620300 31.72% 367887
chr19 28176783 48.32% 432848
chr20 31727850 41.13% 485710
chrM 1800 10.87% 31
chrX 37752450 24.61% 586229
chrY 2439550 20.76% 41475
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14250562 33 2250 64.15 50
global segment-length histogram

Files

Filename Size md5
Pvalb-ChC.CGN-both.bedgraph.gz 82.51 MB bd60843a018485c9c43e29f7ee3cb9d2
Pvalb-ChC.CGN-both.bedgraph.gz.tbi 607.92 KB 9593f7fad5233dbb087bf46713f712e1
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.16 KB e921e4a01aed6e5274970260f0e49c26
statistics/