Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/Pvalb-ChC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for Pvalb-ChC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Pvalb-ChC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_Pvalb-ChC_chn_mc float

zemke2023Conserved_Macaque_Pvalb-ChC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_Pvalb-ChC_chn_mc [0, 1]
n
2,735,169,047
mean
0.054
sd
0.0668

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 273516904792.05% 46712723
chr1 216917792 97.00% 3749238
chr2 189961050 96.82% 3282347
chr3 179660847 96.96% 3102019
chr4 164030350 96.51% 2822079
chr5 181498050 96.89% 3141486
chr6 173045250 96.63% 2989064
chr7 164010450 96.55% 2821086
chr8 139669800 95.87% 2424095
chr9 128270600 95.64% 2237029
chr10 93596900 94.05% 1636953
chr11 127749436 96.00% 2176648
chr12 125924950 96.83% 2178868
chr13 105179180 96.73% 1833478
chr14 122900200 95.97% 2119366
chr15 107706500 95.08% 1874080
chr16 75297614 94.56% 1287318
chr17 91220200 95.59% 1580283
chr18 71575450 96.11% 1254767
chr19 53589833 91.90% 803078
chr20 74149695 96.13% 1276703
chrM 3350 20.22% 50
chrX 139490050 90.94% 2012319
chrY 9721500 82.71% 110369
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46712723 42 2450 58.55 50
global segment-length histogram

Files

Filename Size md5
Pvalb-ChC.CHN-both.bedgraph.gz 318.54 MB ef75fc2f8f8f66c7582233b9e5bde436
Pvalb-ChC.CHN-both.bedgraph.gz.tbi 547.73 KB 4b389714559c241b3fb547b9116d5d98
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.16 KB 9698d9905b25bc539e6c23172ff954d6
statistics/