Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/Sncg/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for Sncg cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Sncg
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_Sncg_chn_mc float

zemke2023Conserved_Macaque_Sncg_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_Sncg_chn_mc [0, 1]
n
2,758,678,490
mean
0.0398
sd
0.0506

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275867849092.84% 47080072
chr1 218352892 97.65% 3772960
chr2 191344800 97.53% 3312313
chr3 180979647 97.67% 3144128
chr4 165280800 97.25% 2848269
chr5 182840592 97.61% 3140718
chr6 174316000 97.34% 3004051
chr7 165157750 97.23% 2847909
chr8 140648800 96.55% 2445780
chr9 129174300 96.31% 2247799
chr10 94210700 94.67% 1662272
chr11 128637400 96.67% 2206979
chr12 126806400 97.51% 2205669
chr13 105868450 97.36% 1836415
chr14 123776450 96.66% 2137354
chr15 108427000 95.71% 1892836
chr16 75843664 95.25% 1302272
chr17 91946350 96.35% 1589547
chr18 72065200 96.77% 1267465
chr19 54163350 92.88% 837884
chr20 74610095 96.72% 1303724
chrM 3350 20.22% 51
chrX 144181250 94.00% 1972434
chrY 10043250 85.45% 101243
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47080072 42 2400 58.6 50
global segment-length histogram

Files

Filename Size md5
Sncg.CHN-both.bedgraph.gz 327.4 MB 7b3925f197638e912267d64aa3e46c85
Sncg.CHN-both.bedgraph.gz.tbi 548.55 KB 0c94b3fae8e0962e9a3de2e5e7294ce3
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.13 KB 9b40eda3c11931c8cfbc015a3da91568
statistics/