Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/Sst/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for Sst cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Sst
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_Sst_chn_mc float

zemke2023Conserved_Macaque_Sst_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_Sst_chn_mc [0, 1]
n
2,788,726,962
mean
0.0451
sd
0.0421

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 278872696293.85% 55105548
chr1 220244242 98.49% 4363599
chr2 192968150 98.35% 3822463
chr3 182552997 98.52% 3618047
chr4 166838700 98.16% 3303556
chr5 184462842 98.48% 3653703
chr6 175873350 98.21% 3482176
chr7 166753914 98.17% 3300064
chr8 141893100 97.40% 2810170
chr9 130428116 97.24% 2580967
chr10 95157200 95.62% 1884948
chr11 129909136 97.63% 2571260
chr12 127804850 98.28% 2533983
chr13 106750080 98.17% 2114543
chr14 125123050 97.71% 2474840
chr15 109430450 96.60% 2167371
chr16 76787114 96.43% 1518172
chr17 92932950 97.38% 1838322
chr18 72665093 97.57% 1440400
chr19 55241183 94.73% 1073925
chr20 75310195 97.63% 1489998
chrM 4600 27.77% 75
chrX 149203700 97.27% 2872921
chrY 10391950 88.41% 190045
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55105548 14 1100 50.61 50
global segment-length histogram

Files

Filename Size md5
Sst.CHN-both.bedgraph.gz 439.34 MB d40eab7fd696578aef6712e6b3afca86
Sst.CHN-both.bedgraph.gz.tbi 563.26 KB fe2bd44aa13ded54eec2acc86797a327
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.12 KB ce3bdee16ab821f08a38ce1a7aa6f55f
statistics/