Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Macaque/Vip/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Macaque M1 region for Vip cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Vip
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: pseudo_bulk_cell_type
  • species: macaque
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Macaque_Vip_chn_mc float

zemke2023Conserved_Macaque_Vip_chn_mc
HISTOGRAM FOR zemke2023Conserved_Macaque_Vip_chn_mc [0, 1]
n
2,786,482,883
mean
0.0407
sd
0.0403

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 278648288393.78% 54566393
chr1 220099992 98.43% 4327847
chr2 192831600 98.28% 3791944
chr3 182439447 98.46% 3591617
chr4 166704100 98.08% 3274486
chr5 184346692 98.41% 3623841
chr6 175739500 98.13% 3452676
chr7 166613264 98.08% 3273248
chr8 141786300 97.33% 2788370
chr9 130325550 97.17% 2560122
chr10 95068350 95.53% 1872695
chr11 129801900 97.55% 2549151
chr12 127730500 98.22% 2514678
chr13 106674880 98.10% 2098430
chr14 125003906 97.62% 2453075
chr15 109358000 96.53% 2153033
chr16 76699064 96.32% 1505970
chr17 92860200 97.30% 1822085
chr18 72616343 97.51% 1430851
chr19 55145450 94.56% 1055363
chr20 75254945 97.56% 1479921
chrM 4150 25.05% 71
chrX 149015200 97.15% 2772140
chrY 10363550 88.17% 174779
2916 contigs with no values (117338625 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54566393 6 1100 51.07 50
global segment-length histogram

Files

Filename Size md5
Vip.CHN-both.bedgraph.gz 427.43 MB 42c0d07929c811ad9318af0695add956
Vip.CHN-both.bedgraph.gz.tbi 562.01 KB 22320b66897b9bbf693bf8251c4ac6c5
chrom_map.txt 219.0 B 66651c9a7fefbd64b075193fe367bbd3
genomic_resource.yaml 1.12 KB 763ef1244b01252e9fb2a2928ab2d292
statistics/