Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/Astro/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for Astro cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Astro
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_Astro_cgn_mc float

zemke2023Conserved_Marmoset_Astro_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_Astro_cgn_mc [0, 1]
n
902,252,361
mean
0.81
sd
0.265

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 90225236131.14% 17020139
chr1 70634250 32.41% 1330604
chr2 61741750 30.19% 1164246
chr3 52536950 27.38% 993144
chr4 52147050 29.96% 979679
chr5 62949800 38.30% 1182763
chr6 49259700 30.60% 928710
chr7 54713600 34.73% 1027782
chr8 37869650 29.85% 713427
chr9 42921800 32.02% 809334
chr10 44935750 32.64% 842637
chr11 41863100 32.28% 790273
chr12 43348400 34.82% 817890
chr13 37646100 31.65% 708370
chr14 34170050 30.48% 643776
chr15 30819650 31.07% 579730
chr16 28906284 29.55% 544300
chr17 21608100 28.83% 405812
chr18 15676427 33.33% 292708
chr19 18494050 35.86% 346514
chr20 17400000 38.15% 328001
chr21 16726150 32.63% 315846
chr22 25836050 50.36% 485837
chrM 2300 13.94% 36
chrX 39354150 26.56% 776128
chrY 691250 8.40% 12592
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17020139 27 1200 53.01 50
global segment-length histogram

Files

Filename Size md5
Astro.CGN-both.bedgraph.gz 118.91 MB 655d5072e16d0557889d86b0b3de0b6a
Astro.CGN-both.bedgraph.gz.tbi 616.47 KB 91bc3a6b73c9e73b1ae13dc6afc11fce
genomic_resource.yaml 1.09 KB b1017a98359263b4444cbf525e28d868
statistics/