Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/Astro/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for Astro cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Astro
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_Astro_chn_mc float

zemke2023Conserved_Marmoset_Astro_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_Astro_chn_mc [0, 1]
n
2,751,248,834
mean
0.0157
sd
0.0194

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275124883494.94% 50890082
chr1 212741285 97.60% 3950519
chr2 200464700 98.03% 3702879
chr3 188375123 98.16% 3411278
chr4 169927400 97.64% 3129485
chr5 160232550 97.49% 3034020
chr6 157503256 97.83% 2920125
chr7 154548408 98.10% 2888686
chr8 124562300 98.20% 2301974
chr9 130682400 97.49% 2414349
chr10 134432325 97.65% 2491412
chr11 126565650 97.59% 2359572
chr12 120928164 97.14% 2262688
chr13 115982400 97.52% 2149841
chr14 108885467 97.14% 2029726
chr15 96768200 97.55% 1823920
chr16 95532034 97.66% 1753667
chr17 72931900 97.32% 1353768
chr18 44909727 95.49% 835986
chr19 49335000 95.66% 923816
chr20 44143850 96.77% 831841
chr21 49856742 97.26% 912104
chr22 47926100 93.42% 886670
chrM 4049 24.54% 60
chrX 141969704 95.82% 2498019
chrY 2040100 24.79% 23677
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50890082 4 1950 54.06 50
global segment-length histogram

Files

Filename Size md5
Astro.CHN-both.bedgraph.gz 391.1 MB 23ef95a7ed577713e31ed287277d4684
Astro.CHN-both.bedgraph.gz.tbi 559.66 KB 0d7dcacfa778a7f7c28e853512398fec
genomic_resource.yaml 1.09 KB 55f43a847b709011316a3a3add0f7940
statistics/