Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/L23/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for L23 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L23
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_L23_cgn_mc float

zemke2023Conserved_Marmoset_L23_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_L23_cgn_mc [0, 1]
n
907,016,911
mean
0.813
sd
0.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 90701691131.30% 17852649
chr1 70995600 32.57% 1395473
chr2 62029150 30.33% 1221001
chr3 52799000 27.51% 1038318
chr4 52438550 30.13% 1030293
chr5 63174850 38.44% 1244130
chr6 49510900 30.75% 974205
chr7 54907700 34.85% 1080779
chr8 38037850 29.99% 748147
chr9 43124100 32.17% 848300
chr10 45184250 32.82% 889108
chr11 42063000 32.43% 828498
chr12 43535850 34.97% 857316
chr13 37852000 31.83% 744008
chr14 34360000 30.65% 675776
chr15 30954250 31.20% 609361
chr16 29048134 29.70% 570809
chr17 21728250 28.99% 426853
chr18 15772427 33.54% 309574
chr19 18586150 36.04% 365503
chr20 17466100 38.29% 344180
chr21 16820400 32.81% 330790
chr22 25989300 50.66% 512018
chrM 2800 16.97% 48
chrX 39674550 26.78% 790320
chrY 961750 11.69% 17841
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17852649 27 750 50.81 50
global segment-length histogram

Files

Filename Size md5
L23.CGN-both.bedgraph.gz 139.03 MB 8d11cd339d1a59d9d6f55648318e2247
L23.CGN-both.bedgraph.gz.tbi 625.55 KB 00ae9c2af4f6abd46d9a2bc091e054d9
genomic_resource.yaml 1.08 KB 3d5b2e6006e473662f49368506f0f620
statistics/