Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/L23/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for L23 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L23
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_L23_chn_mc float

zemke2023Conserved_Marmoset_L23_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_L23_chn_mc [0, 1]
n
2,759,682,588
mean
0.037
sd
0.0358

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275968258895.23% 54869007
chr1 213361035 97.89% 4244174
chr2 200936600 98.26% 3998414
chr3 188815523 98.39% 3755507
chr4 170410400 97.91% 3389887
chr5 160618650 97.73% 3197081
chr6 157946856 98.10% 3141485
chr7 154877208 98.31% 3083528
chr8 124838704 98.41% 2484942
chr9 131027950 97.75% 2606280
chr10 134828975 97.94% 2681557
chr11 126894050 97.85% 2524468
chr12 121248164 97.40% 2411923
chr13 116327050 97.81% 2313629
chr14 109246417 97.46% 2171986
chr15 97000900 97.78% 1931223
chr16 95782984 97.92% 1905702
chr17 73129200 97.58% 1455078
chr18 45069177 95.83% 896111
chr19 49489450 95.96% 982668
chr20 44253600 97.02% 879897
chr21 50014842 97.57% 993532
chr22 48149600 93.86% 953890
chrM 5699 34.54% 80
chrX 142585954 96.23% 2826358
chrY 2823600 34.32% 39607
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54869007 4 1250 50.3 50
global segment-length histogram

Files

Filename Size md5
L23.CHN-both.bedgraph.gz 459.7 MB b4e4918ffc9ccd6c66a05f3066e6647e
L23.CHN-both.bedgraph.gz.tbi 567.06 KB 1b696de4ef39482aeae02b04005713ef
genomic_resource.yaml 1.08 KB 8035a31227b6b6ba07fb9493817ce2cf
statistics/