Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/L4/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for L4 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L4
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_L4_chn_mc float

zemke2023Conserved_Marmoset_L4_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_L4_chn_mc [0, 1]
n
2,757,671,722
mean
0.0416
sd
0.04

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275767172295.16% 54719968
chr1 213218185 97.82% 4234600
chr2 200809129 98.20% 3987986
chr3 188716523 98.34% 3745178
chr4 170300300 97.85% 3381345
chr5 160527450 97.67% 3189832
chr6 157850006 98.04% 3133076
chr7 154806558 98.26% 3077143
chr8 124781350 98.37% 2479009
chr9 130955900 97.70% 2599235
chr10 134743025 97.87% 2674358
chr11 126815250 97.78% 2518274
chr12 121172864 97.34% 2406242
chr13 116241700 97.74% 2307897
chr14 109154217 97.38% 2166014
chr15 96942750 97.73% 1926719
chr16 95719334 97.86% 1901071
chr17 73085800 97.52% 1451733
chr18 45032477 95.75% 893404
chr19 49453529 95.89% 979535
chr20 44229000 96.96% 877825
chr21 49973992 97.49% 990184
chr22 48095280 93.75% 949243
chrM 4949 30.00% 70
chrX 142441254 96.13% 2814092
chrY 2600900 31.61% 35903
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54719968 4 1450 50.4 50
global segment-length histogram

Files

Filename Size md5
L4.CHN-both.bedgraph.gz 454.66 MB 201020ef2352f82537a6d40e1d92801f
L4.CHN-both.bedgraph.gz.tbi 566.84 KB ae5124ea397fa58fa33055669a3f483a
genomic_resource.yaml 1.08 KB 1b1cb95ca3aff80f233fb0fe0108d1f3
statistics/