Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/L5-IT/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for L5-IT cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L5-IT
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_L5-IT_chn_mc float

zemke2023Conserved_Marmoset_L5-IT_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_L5-IT_chn_mc [0, 1]
n
2,756,783,143
mean
0.0442
sd
0.0429

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275678314395.13% 54643470
chr1 213150935 97.79% 4229013
chr2 200775650 98.19% 3983564
chr3 188671473 98.31% 3740579
chr4 170250200 97.82% 3375393
chr5 160493000 97.65% 3186852
chr6 157793156 98.01% 3127777
chr7 154764958 98.23% 3073053
chr8 124743600 98.34% 2476568
chr9 130923950 97.67% 2595663
chr10 134695725 97.84% 2671145
chr11 126779850 97.76% 2515783
chr12 121139164 97.31% 2401760
chr13 116199500 97.70% 2304890
chr14 109115017 97.35% 2163167
chr15 96924700 97.71% 1924651
chr16 95699084 97.83% 1898759
chr17 73062400 97.49% 1450043
chr18 45010277 95.70% 892395
chr19 49440379 95.87% 977860
chr20 44219200 96.94% 877356
chr21 49961542 97.47% 988524
chr22 48078930 93.72% 947339
chrM 4599 27.87% 63
chrX 142355604 96.08% 2806409
chrY 2530250 30.75% 34864
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54643470 4 1600 50.45 50
global segment-length histogram

Files

Filename Size md5
L5-IT.CHN-both.bedgraph.gz 452.52 MB 83f94d9a669c10db78fd410e8bf8130d
L5-IT.CHN-both.bedgraph.gz.tbi 566.57 KB e95efc0313fe4c46c701f795c471256c
genomic_resource.yaml 1.09 KB 8d9ff059727097eeb0425011e1a9bf19
statistics/