Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/L6-CT/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for L6-CT cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L6-CT
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_L6-CT_chn_mc float

zemke2023Conserved_Marmoset_L6-CT_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_L6-CT_chn_mc [0, 1]
n
2,756,344,385
mean
0.0395
sd
0.0398

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275634438595.12% 54509797
chr1 213117685 97.78% 4219835
chr2 200751200 98.17% 3974526
chr3 188647373 98.30% 3731274
chr4 170229200 97.81% 3367829
chr5 160465800 97.64% 3179844
chr6 157781356 98.00% 3120049
chr7 154751700 98.23% 3066335
chr8 124731550 98.33% 2470814
chr9 130901150 97.65% 2589159
chr10 134672375 97.82% 2664028
chr11 126759100 97.74% 2510369
chr12 121118314 97.29% 2396267
chr13 116184250 97.69% 2300221
chr14 109100717 97.33% 2157181
chr15 96906050 97.69% 1921448
chr16 95681284 97.82% 1894350
chr17 73057050 97.48% 1446849
chr18 45003627 95.69% 890303
chr19 49429279 95.85% 976112
chr20 44216350 96.93% 875496
chr21 49955692 97.46% 985853
chr22 48064730 93.69% 943753
chrM 5349 32.42% 71
chrX 142317204 96.05% 2794486
chrY 2496000 30.33% 33345
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54509797 4 1600 50.57 50
global segment-length histogram

Files

Filename Size md5
L6-CT.CHN-both.bedgraph.gz 449.07 MB 559d1e43fa68c5cc1eb26dca279dcbc3
L6-CT.CHN-both.bedgraph.gz.tbi 565.86 KB 615b0672dd0667da539d941ab5bbbdfa
genomic_resource.yaml 1.09 KB d91c4cc88aaf98e4e4f3851a9b06045b
statistics/