Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/L6b/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for L6b cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L6b
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_L6b_cgn_mc float

zemke2023Conserved_Marmoset_L6b_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_L6b_cgn_mc [0, 1]
n
897,740,861
mean
0.836
sd
0.268

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89774086130.98% 15730841
chr1 70245550 32.23% 1219015
chr2 61440050 30.05% 1070336
chr3 52246550 27.22% 918874
chr4 51859650 29.80% 901663
chr5 62715750 38.16% 1083422
chr6 49004800 30.44% 857884
chr7 54502200 34.59% 946198
chr8 37695150 29.72% 659538
chr9 42697350 31.85% 745815
chr10 44709250 32.48% 782610
chr11 41669250 32.13% 732542
chr12 43162200 34.67% 753117
chr13 37449650 31.49% 654074
chr14 33998200 30.33% 596338
chr15 30687800 30.94% 537406
chr16 28762534 29.40% 502246
chr17 21491050 28.68% 374989
chr18 15583677 33.13% 270405
chr19 18405100 35.69% 318941
chr20 17342600 38.02% 300255
chr21 16630400 32.44% 289696
chr22 25704300 50.11% 445448
chrM 3400 20.61% 46
chrX 39141150 26.42% 759482
chrY 593250 7.21% 10501
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 15730841 27 1500 57.07 50
global segment-length histogram

Files

Filename Size md5
L6b.CGN-both.bedgraph.gz 102.11 MB c8e12bff7f3abaca187f3418bd6e5a14
L6b.CGN-both.bedgraph.gz.tbi 613.25 KB b4f5ced4a73e39134209b13ceb187e92
genomic_resource.yaml 1.08 KB d785fd4ed75efe8a9aba0ab1be67cd45
statistics/