Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/L6b/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for L6b cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: L6b
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_L6b_chn_mc float

zemke2023Conserved_Marmoset_L6b_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_L6b_chn_mc [0, 1]
n
2,745,251,232
mean
0.0487
sd
0.0522

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 274525123294.73% 52127873
chr1 212235985 97.37% 4038599
chr2 200091850 97.85% 3800242
chr3 188006623 97.97% 3563603
chr4 169533050 97.41% 3218492
chr5 159945950 97.32% 3058134
chr6 157158300 97.61% 2987978
chr7 154295058 97.94% 2946353
chr8 124342800 98.02% 2374237
chr9 130411900 97.29% 2472181
chr10 134137675 97.43% 2550997
chr11 126312950 97.40% 2408477
chr12 120686714 96.95% 2298721
chr13 115735000 97.31% 2218332
chr14 108629717 96.91% 2068742
chr15 96596700 97.38% 1847544
chr16 95344034 97.47% 1819429
chr17 72777250 97.11% 1390397
chr18 44800427 95.26% 850352
chr19 49232350 95.47% 935026
chr20 44070400 96.61% 844375
chr21 49739950 97.04% 938396
chr22 47778550 93.13% 884546
chrM 6299 38.18% 78
chrX 141637050 95.59% 2590041
chrY 1744650 21.20% 22601
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52127873 14 1700 52.66 50
global segment-length histogram

Files

Filename Size md5
L6b.CHN-both.bedgraph.gz 400.47 MB 6eea2fba56a30d874b2031064c7f7984
L6b.CHN-both.bedgraph.gz.tbi 560.93 KB 00d115a4a60b483fd1730cc156df85fe
genomic_resource.yaml 1.08 KB 8475e583700856c1f820235876d454c5
statistics/