Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/Lamp5/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for Lamp5 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Lamp5
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_Lamp5_chn_mc float

zemke2023Conserved_Marmoset_Lamp5_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_Lamp5_chn_mc [0, 1]
n
2,728,692,099
mean
0.0324
sd
0.0447

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 272869209994.16% 44759141
chr1 210843550 96.73% 3481483
chr2 199033500 97.33% 3263807
chr3 186903750 97.39% 3053023
chr4 168573200 96.86% 2784205
chr5 159088900 96.80% 2658780
chr6 156203806 97.02% 2574989
chr7 153501800 97.43% 2551125
chr8 123699700 97.52% 2059501
chr9 129629800 96.71% 2100058
chr10 133356675 96.87% 2189329
chr11 125629050 96.87% 2082840
chr12 119985864 96.38% 1984674
chr13 115041700 96.73% 1935077
chr14 107915067 96.28% 1776477
chr15 96084150 96.86% 1599619
chr16 94775084 96.89% 1579304
chr17 72372300 96.57% 1211458
chr18 44507250 94.63% 732858
chr19 48934000 94.89% 821458
chr20 43828200 96.08% 743245
chr21 49430900 96.43% 808167
chr22 47376550 92.35% 728557
chrM 3199 19.39% 48
chrX 140664854 94.94% 2023543
chrY 1309250 15.91% 15516
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44759141 17 2850 60.96 50
global segment-length histogram

Files

Filename Size md5
Lamp5.CHN-both.bedgraph.gz 316.63 MB c68425214f808514c528b47462346f85
Lamp5.CHN-both.bedgraph.gz.tbi 548.79 KB 105418db3287803c5ca7b300ebb145a7
genomic_resource.yaml 1.09 KB 258f6efa50b95caba8531775d9191444
statistics/