Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/MG/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for MG cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: MG
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_MG_cgn_mc float

zemke2023Conserved_Marmoset_MG_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_MG_cgn_mc [0, 1]
n
891,681,984
mean
0.749
sd
0.286

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89168198430.77% 16319682
chr1 69700600 31.98% 1270609
chr2 60965400 29.81% 1116908
chr3 51825700 27.01% 963003
chr4 51476050 29.58% 937622
chr5 62362200 37.94% 1126428
chr6 48618700 30.20% 895841
chr7 54201100 34.40% 988889
chr8 37427050 29.50% 688481
chr9 42408550 31.64% 773599
chr10 44434100 32.28% 809755
chr11 41399400 31.92% 759983
chr12 42907600 34.47% 782846
chr13 37176200 31.26% 683969
chr14 33734550 30.10% 617555
chr15 30472800 30.72% 554602
chr16 28552734 29.19% 526179
chr17 21299450 28.42% 390393
chr18 15463300 32.88% 278826
chr19 18268300 35.42% 331347
chr20 17237200 37.79% 315199
chr21 16511250 32.21% 306797
chr22 25543550 49.79% 449964
chrM 1900 11.52% 27
chrX 38500750 25.98% 730611
chrY 1193550 14.51% 20249
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 16319682 34 1300 54.64 50
global segment-length histogram

Files

Filename Size md5
MG.CGN-both.bedgraph.gz 105.71 MB 548884e162588d142ba3cca2fa21b5f0
MG.CGN-both.bedgraph.gz.tbi 617.38 KB e55ae45e5e052178ee22678069cf1875
genomic_resource.yaml 1.08 KB acf96041f6c04fd0e1297d01ff6a3a55
statistics/