Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/MG/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for MG cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: MG
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_MG_chn_mc float

zemke2023Conserved_Marmoset_MG_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_MG_chn_mc [0, 1]
n
2,738,927,117
mean
0.0146
sd
0.0247

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 273892711794.52% 40087128
chr1 211571700 97.07% 3120727
chr2 199554350 97.59% 2851625
chr3 187505900 97.71% 2652683
chr4 169090350 97.16% 2456166
chr5 159558900 97.08% 2541913
chr6 156703150 97.33% 2275747
chr7 153959950 97.72% 2361382
chr8 124024250 97.77% 1797163
chr9 130080550 97.04% 1903229
chr10 133828175 97.21% 2009552
chr11 125992050 97.15% 1881982
chr12 120384900 96.70% 1842918
chr13 115404550 97.03% 1715428
chr14 108290067 96.61% 1586586
chr15 96348250 97.13% 1448929
chr16 95086134 97.21% 1380771
chr17 72562900 96.82% 1028476
chr18 44664050 94.97% 684805
chr19 49069550 95.15% 743267
chr20 43952450 96.36% 673195
chr21 49590892 96.75% 695579
chr22 47609050 92.80% 732998
chrM 3349 20.30% 52
chrX 140822200 95.04% 1677943
chrY 3269450 39.73% 24012
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40087128 34 3700 68.32 50
global segment-length histogram

Files

Filename Size md5
MG.CHN-both.bedgraph.gz 280.75 MB d9152e28cb33ddea121987cb7a2b2151
MG.CHN-both.bedgraph.gz.tbi 541.52 KB 32d84e1962dd9496d32251536ebb3c77
genomic_resource.yaml 1.08 KB bb58365c337674b34f8480a345aaa12c
statistics/