Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/NP/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for NP cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: NP
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_NP_cgn_mc float

zemke2023Conserved_Marmoset_NP_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_NP_cgn_mc [0, 1]
n
882,965,084
mean
0.849
sd
0.266

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 88296508430.47% 14474420
chr1 69067500 31.69% 1120382
chr2 60475250 29.57% 991114
chr3 51351800 26.76% 855413
chr4 50951650 29.28% 833904
chr5 61841750 37.63% 988469
chr6 48177700 29.92% 789571
chr7 53695500 34.08% 864757
chr8 37038800 29.20% 602533
chr9 41983150 31.32% 681487
chr10 43987600 31.95% 719301
chr11 41050850 31.65% 674057
chr12 42500000 34.14% 686511
chr13 36833950 30.97% 601478
chr14 33438900 29.83% 547164
chr15 30187850 30.43% 493092
chr16 28318534 28.95% 466963
chr17 21115750 28.18% 346768
chr18 15270400 32.47% 245516
chr19 18109100 35.11% 290297
chr20 17102850 37.49% 273099
chr21 16354350 31.91% 268467
chr22 25271200 49.26% 403185
chrM 1500 9.09% 21
chrX 38382050 25.90% 722986
chrY 457100 5.56% 7885
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14474420 34 1600 61 50
global segment-length histogram

Files

Filename Size md5
NP.CGN-both.bedgraph.gz 87.95 MB 983c03a0559a3abf29a77c106a2e0f03
NP.CGN-both.bedgraph.gz.tbi 615.25 KB 6d45ced9914dcffa575ed89c363cea8b
genomic_resource.yaml 1.08 KB 6dce71a0b6cc23a58cd0c56f2c881a17
statistics/