Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/NP/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for NP cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: NP
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_NP_chn_mc float

zemke2023Conserved_Marmoset_NP_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_NP_chn_mc [0, 1]
n
2,729,119,126
mean
0.0391
sd
0.0501

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 272911912694.18% 46787448
chr1 210915600 96.77% 3648457
chr2 199073200 97.35% 3423395
chr3 186997700 97.44% 3187020
chr4 168531000 96.83% 2905086
chr5 159104950 96.81% 2764152
chr6 156229006 97.03% 2689858
chr7 153522650 97.45% 2664359
chr8 123646350 97.47% 2124612
chr9 129675050 96.74% 2206764
chr10 133384825 96.89% 2293229
chr11 125644506 96.88% 2177703
chr12 119988814 96.39% 2066297
chr13 115064500 96.75% 2017964
chr14 107966800 96.32% 1868989
chr15 96098500 96.87% 1674944
chr16 94822684 96.94% 1651574
chr17 72373950 96.57% 1253048
chr18 44477150 94.57% 757313
chr19 48928550 94.88% 844744
chr20 43850000 96.13% 774291
chr21 49436042 96.44% 842473
chr22 47373450 92.34% 756465
chrM 3099 18.78% 52
chrX 140684400 94.95% 2178349
chrY 1326350 16.12% 16310
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46787448 6 2150 58.33 50
global segment-length histogram

Files

Filename Size md5
NP.CHN-both.bedgraph.gz 334.79 MB e47e0a7c72c719c028dfaa3eb2cd59c4
NP.CHN-both.bedgraph.gz.tbi 551.76 KB 22e91d0cb9ee66d79dbc55d67bceb51d
genomic_resource.yaml 1.08 KB dfa872ebee1b43e88e3480622b82ac9e
statistics/