Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/ODC/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for ODC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: ODC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_ODC_cgn_mc float

zemke2023Conserved_Marmoset_ODC_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_ODC_cgn_mc [0, 1]
n
905,444,061
mean
0.797
sd
0.263

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 90544406131.25% 17732019
chr1 70870650 32.52% 1386371
chr2 61932300 30.29% 1213516
chr3 52704950 27.46% 1032314
chr4 52347300 30.08% 1023132
chr5 63104750 38.40% 1235871
chr6 49423300 30.70% 967286
chr7 54848850 34.81% 1073319
chr8 37989300 29.95% 743462
chr9 43059650 32.12% 842562
chr10 45103100 32.76% 881758
chr11 41999900 32.39% 823162
chr12 43475100 34.92% 851993
chr13 37785550 31.77% 739146
chr14 34291550 30.59% 670684
chr15 30909200 31.16% 604587
chr16 28999384 29.65% 567481
chr17 21690450 28.94% 423952
chr18 15741127 33.47% 307005
chr19 18551350 35.97% 362575
chr20 17441900 38.24% 341953
chr21 16789050 32.75% 328652
chr22 25939600 50.56% 507855
chrM 2700 16.36% 42
chrX 39568600 26.71% 787190
chrY 874450 10.63% 16151
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17732019 27 850 51.06 50
global segment-length histogram

Files

Filename Size md5
ODC.CGN-both.bedgraph.gz 134.27 MB 35d9ad24d848c8e24a3cdd0c97ec0984
ODC.CGN-both.bedgraph.gz.tbi 622.82 KB fddd0ee9a7af0f203eee990e9c4617da
genomic_resource.yaml 1.08 KB a4bec48bb9562b987dbcad998dfda3f8
statistics/