Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/ODC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for ODC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: ODC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_ODC_chn_mc float

zemke2023Conserved_Marmoset_ODC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_ODC_chn_mc [0, 1]
n
2,756,755,817
mean
0.0141
sd
0.0155

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275675581795.13% 53699923
chr1 213131485 97.78% 4151822
chr2 200769400 98.18% 3908880
chr3 188650123 98.30% 3650942
chr4 170244300 97.82% 3310484
chr5 160488000 97.65% 3149907
chr6 157796156 98.01% 3076397
chr7 154762958 98.23% 3032843
chr8 124749254 98.34% 2432764
chr9 130917700 97.67% 2549242
chr10 134687325 97.83% 2625764
chr11 126784200 97.76% 2477240
chr12 121139664 97.31% 2368664
chr13 116204400 97.70% 2267717
chr14 109118017 97.35% 2126392
chr15 96913750 97.70% 1900730
chr16 95696284 97.83% 1864142
chr17 73060750 97.49% 1427038
chr18 45016227 95.72% 878304
chr19 49429729 95.85% 965514
chr20 44210450 96.92% 865977
chr21 49960092 97.47% 968111
chr22 48067150 93.70% 933908
chrM 4799 29.09% 68
chrX 142365504 96.08% 2737027
chrY 2588100 31.45% 30046
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53699923 4 1500 51.34 50
global segment-length histogram

Files

Filename Size md5
ODC.CHN-both.bedgraph.gz 433.93 MB d0dfc786486589d1416880c62b6713d4
ODC.CHN-both.bedgraph.gz.tbi 565.24 KB 96ab2b06e427a300880c20074c45536b
genomic_resource.yaml 1.08 KB c8ecf1ea1bb20ad04d5b4458c00c309a
statistics/