Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/OPC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for OPC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: OPC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_OPC_chn_mc float

zemke2023Conserved_Marmoset_OPC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_OPC_chn_mc [0, 1]
n
2,727,054,994
mean
0.00934
sd
0.0228

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 272705499494.11% 29759947
chr1 210659335 96.65% 2237153
chr2 198858579 97.25% 2086422
chr3 186747373 97.31% 1865734
chr4 168475950 96.80% 1812240
chr5 159047400 96.77% 1883281
chr6 156145200 96.98% 1719757
chr7 153470158 97.41% 1743925
chr8 123602350 97.44% 1317530
chr9 129608150 96.69% 1413435
chr10 133275825 96.81% 1469863
chr11 125549300 96.81% 1441719
chr12 119960314 96.36% 1388476
chr13 115018550 96.71% 1285533
chr14 107905950 96.27% 1215621
chr15 96059200 96.83% 1085733
chr16 94761084 96.88% 1044811
chr17 72313050 96.49% 758500
chr18 44457327 94.53% 477744
chr19 48893250 94.81% 560147
chr20 43748100 95.91% 510069
chr21 49367850 96.31% 505913
chr22 47301700 92.20% 546869
chrM 3349 20.30% 46
chrX 140538400 94.85% 1375744
chrY 1287250 15.64% 13682
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29759947 25 3200 91.64 50
global segment-length histogram

Files

Filename Size md5
OPC.CHN-both.bedgraph.gz 200.44 MB 088c552923eae7d282f863db7081b172
OPC.CHN-both.bedgraph.gz.tbi 521.91 KB b2ec2b05d0376d3cf04804ce4c40d214
genomic_resource.yaml 1.08 KB 93c17ed375744283f4a6f3129fd8fe52
statistics/