Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/Pvalb-BC/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for Pvalb-BC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Pvalb-BC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_Pvalb-BC_cgn_mc float

zemke2023Conserved_Marmoset_Pvalb-BC_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_Pvalb-BC_cgn_mc [0, 1]
n
901,604,011
mean
0.85
sd
0.241

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 90160401131.11% 16606204
chr1 70578900 32.38% 1293149
chr2 61704200 30.18% 1134429
chr3 52497550 27.36% 969216
chr4 52112500 29.94% 953564
chr5 62921000 38.28% 1152241
chr6 49211950 30.57% 905344
chr7 54684350 34.71% 1002524
chr8 37845800 29.83% 694951
chr9 42881750 31.99% 789132
chr10 44900700 32.61% 822838
chr11 41828350 32.25% 770631
chr12 43321050 34.80% 797475
chr13 37618750 31.63% 689399
chr14 34145350 30.46% 627533
chr15 30793250 31.04% 565129
chr16 28888684 29.53% 530455
chr17 21596750 28.82% 396299
chr18 15662927 33.30% 285360
chr19 18479000 35.83% 337374
chr20 17394150 38.13% 318507
chr21 16712300 32.60% 306910
chr22 25820200 50.33% 476843
chrM 2150 13.03% 34
chrX 39331100 26.54% 774710
chrY 671300 8.16% 12157
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 16606204 27 900 54.29 50
global segment-length histogram

Files

Filename Size md5
Pvalb-BC.CGN-both.bedgraph.gz 112.76 MB 1033a2d039812d12e6d2bac5c7af32d3
Pvalb-BC.CGN-both.bedgraph.gz.tbi 614.65 KB 7092482d834f5f0c73106405135da36f
genomic_resource.yaml 1.11 KB 0d4f6b101fe4076fc25142ce795a0202
statistics/