Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/Pvalb-BC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for Pvalb-BC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Pvalb-BC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_Pvalb-BC_chn_mc float

zemke2023Conserved_Marmoset_Pvalb-BC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_Pvalb-BC_chn_mc [0, 1]
n
2,750,345,252
mean
0.0491
sd
0.0475

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275034525294.91% 53694828
chr1 212668800 97.57% 4163804
chr2 200408700 98.01% 3919699
chr3 188324423 98.13% 3679879
chr4 169875500 97.61% 3320902
chr5 160192500 97.47% 3135498
chr6 157443606 97.79% 3073987
chr7 154516158 98.08% 3028997
chr8 124525450 98.17% 2437014
chr9 130642000 97.46% 2550103
chr10 134386975 97.61% 2623408
chr11 126517706 97.55% 2476111
chr12 120889414 97.11% 2362642
chr13 115947717 97.49% 2268936
chr14 108845517 97.11% 2129707
chr15 96736450 97.52% 1895166
chr16 95500584 97.63% 1869951
chr17 72908300 97.29% 1427973
chr18 44891527 95.45% 877151
chr19 49320250 95.64% 961218
chr20 44134100 96.75% 863451
chr21 49842942 97.24% 968427
chr22 47905030 93.38% 916060
chrM 3999 24.24% 64
chrX 141929654 95.79% 2718324
chrY 1987950 24.16% 26356
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53694828 6 1800 51.22 50
global segment-length histogram

Files

Filename Size md5
Pvalb-BC.CHN-both.bedgraph.gz 426.52 MB ed42443c5aae6539ff04d83292520043
Pvalb-BC.CHN-both.bedgraph.gz.tbi 564.08 KB 6dd451119b0d1a4b0b187a6d9ff29d22
genomic_resource.yaml 1.11 KB 627b990258c2c0b0c7761cf8facf7b04
statistics/