Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/Pvalb-ChC/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for Pvalb-ChC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Pvalb-ChC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_Pvalb-ChC_cgn_mc float

zemke2023Conserved_Marmoset_Pvalb-ChC_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_Pvalb-ChC_cgn_mc [0, 1]
n
588,315,384
mean
0.845
sd
0.327

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 58831538420.30% 8671791
chr1 45626600 20.93% 660907
chr2 39354250 19.25% 586217
chr3 33771950 17.60% 518490
chr4 33746450 19.39% 503353
chr5 43086250 26.22% 604026
chr6 32204350 20.00% 478809
chr7 36468900 23.15% 523380
chr8 24868100 19.60% 371085
chr9 27193850 20.29% 399282
chr10 28089050 20.40% 410114
chr11 28453550 21.94% 416940
chr12 28862100 23.18% 413435
chr13 24433400 20.54% 362650
chr14 21848350 19.49% 325405
chr15 20244500 20.41% 302703
chr16 18516134 18.93% 276402
chr17 13576800 18.12% 206711
chr18 10215500 21.72% 149550
chr19 12211950 23.68% 175636
chr20 11868250 26.02% 165338
chr21 10527150 20.54% 153541
chr22 17847150 34.79% 236480
chrM 1050 6.36% 13
chrX 25108800 16.95% 428310
chrY 190950 2.32% 3014
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 8671791 34 2300 67.84 50
global segment-length histogram

Files

Filename Size md5
Pvalb-ChC.CGN-both.bedgraph.gz 47.64 MB 4fc1d56bee7492df4d2c59d713d42a60
Pvalb-ChC.CGN-both.bedgraph.gz.tbi 763.21 KB 748e8f4ecdc3c8d6372ffb1c335028d4
genomic_resource.yaml 1.12 KB 9220b76d42efb8705eb790c79e389e3e
statistics/