Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/Pvalb-ChC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for Pvalb-ChC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Pvalb-ChC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_Pvalb-ChC_chn_mc float

zemke2023Conserved_Marmoset_Pvalb-ChC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_Pvalb-ChC_chn_mc [0, 1]
n
2,085,852,764
mean
0.0494
sd
0.0949

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 208585276471.98% 26471952
chr1 159025600 72.96% 2060329
chr2 149391950 73.06% 1919358
chr3 141969550 73.98% 1822040
chr4 128619150 73.90% 1652364
chr5 126333750 76.87% 1614245
chr6 119607956 74.29% 1540407
chr7 119359150 75.76% 1555283
chr8 94941550 74.85% 1208676
chr9 96919100 72.30% 1214186
chr10 98540475 71.58% 1241846
chr11 99269350 76.54% 1270383
chr12 93049450 74.75% 1201584
chr13 88155900 74.12% 1162287
chr14 81616350 72.81% 1068197
chr15 74574650 75.18% 955081
chr16 71448484 73.04% 948539
chr17 54275450 72.42% 701161
chr18 34256250 72.84% 439726
chr19 38040750 73.76% 491053
chr20 34543800 75.73% 460766
chr21 36309650 70.84% 463758
chr22 37683950 73.46% 394667
chrM 2099 12.72% 24
chrX 107400300 72.49% 1080040
chrY 518100 6.30% 5952
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 26471952 49 2800 78.79 50
global segment-length histogram

Files

Filename Size md5
Pvalb-ChC.CHN-both.bedgraph.gz 164.61 MB 94f9779c72f3920f5343837a7a83fb90
Pvalb-ChC.CHN-both.bedgraph.gz.tbi 506.75 KB c590dd13deea2ca6797dd411e6af3352
genomic_resource.yaml 1.12 KB 691bbb5523dcfd803e7bc322f23e80fd
statistics/