Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/Sncg/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for Sncg cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Sncg
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_Sncg_cgn_mc float

zemke2023Conserved_Marmoset_Sncg_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_Sncg_cgn_mc [0, 1]
n
774,307,850
mean
0.837
sd
0.308

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 77430785026.72% 11713298
chr1 60959600 27.97% 909093
chr2 52875700 25.86% 806368
chr3 44314200 23.09% 691866
chr4 43761850 25.14% 665054
chr5 55229800 33.60% 803392
chr6 42471200 26.38% 645581
chr7 47670150 30.26% 705583
chr8 32718750 25.79% 498797
chr9 36712050 27.39% 551510
chr10 38774650 28.16% 581899
chr11 36139600 27.87% 543983
chr12 37531850 30.15% 554124
chr13 32596000 27.41% 492065
chr14 29045600 25.91% 440802
chr15 26255800 26.47% 399049
chr16 24710200 25.26% 378200
chr17 18292350 24.41% 281360
chr18 13384100 28.46% 199585
chr19 15887550 30.81% 232732
chr20 15183500 33.29% 219818
chr21 14139250 27.58% 212715
chr22 22433050 43.73% 310525
chrM 1250 7.58% 13
chrX 32936000 22.23% 584565
chrY 283800 3.45% 4619
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 11713298 50 2200 66.11 50
global segment-length histogram

Files

Filename Size md5
Sncg.CGN-both.bedgraph.gz 66.22 MB 641e3cb1a5a429d5670169ac1100a881
Sncg.CGN-both.bedgraph.gz.tbi 659.61 KB 478772d220360ff2e2e0a2c48266ee5d
genomic_resource.yaml 1.09 KB cb5aa2dc4f9175ba963ed7fd40491b59
statistics/