Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Marmoset/Vsc/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Marmoset M1 region for Vsc cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: m1
  • cell_type: Vsc
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: pseudo_bulk_cell_type
  • species: marmoset
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Marmoset_Vsc_chn_mc float

zemke2023Conserved_Marmoset_Vsc_chn_mc
HISTOGRAM FOR zemke2023Conserved_Marmoset_Vsc_chn_mc [0, 1]
n
2,742,061,395
mean
0.0137
sd
0.0214

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 274206139594.62% 43445061
chr1 211966085 97.25% 3368993
chr2 199899250 97.76% 3165443
chr3 187816750 97.87% 2848612
chr4 169365150 97.31% 2709627
chr5 159808350 97.24% 2658044
chr6 156981700 97.50% 2490810
chr7 154189850 97.87% 2545509
chr8 124199850 97.91% 1964819
chr9 130273250 97.19% 2071785
chr10 133979825 97.32% 2096496
chr11 126184900 97.30% 2030643
chr12 120552564 96.84% 1970307
chr13 115555800 97.16% 1806223
chr14 108511717 96.81% 1759258
chr15 96509950 97.29% 1568129
chr16 95236084 97.36% 1490407
chr17 72700100 97.01% 1122849
chr18 44752850 95.16% 714348
chr19 49179679 95.36% 794637
chr20 44021450 96.51% 726881
chr21 49670592 96.90% 763092
chr22 47698350 92.98% 769711
chrM 3849 23.33% 57
chrX 141373200 95.41% 1990182
chrY 1630250 19.81% 18199
939 contigs with no values (67606501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43445061 17 2300 63.12 50
global segment-length histogram

Files

Filename Size md5
Vsc.CHN-both.bedgraph.gz 310.85 MB 86e3cccdde20bae6f6807053265f314e
Vsc.CHN-both.bedgraph.gz.tbi 547.04 KB 9a10808d828955fc6072150290690c5d
genomic_resource.yaml 1.08 KB 0b4054b90cb6a449ab57b5bb0eef0649
statistics/