Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Astro/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Astro cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Astro
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Astro_cgn_mc float

zemke2023Conserved_Mouse_Astro_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Astro_cgn_mc [0, 1]
n
750,933,899
mean
0.781
sd
0.266

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75093389927.50% 14786460
chr1 53291450 27.26% 1050997
chr2 53351100 29.30% 1051912
chr3 42918500 26.82% 845553
chr4 45431800 29.03% 895542
chr5 46339150 30.52% 913823
chr6 41740600 27.88% 823019
chr7 41263300 28.37% 814037
chr8 39289850 30.36% 774600
chr9 37843400 30.37% 745897
chr10 38859050 29.73% 765847
chr11 39818650 32.62% 784585
chr12 33689900 28.04% 663755
chr13 34815350 28.91% 685506
chr14 32874000 26.32% 647636
chr15 30624350 29.43% 603798
chr16 27172600 27.67% 535346
chr17 29216600 30.76% 575313
chr18 25867850 28.52% 509566
chr19 19311700 31.44% 380274
chrM 6749 41.41% 135
chrX 32682950 19.11% 631713
chrY 4525000 4.93% 87606
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14786460 49 850 50.79 50
global segment-length histogram

Files

Filename Size md5
Astro.CGN-both.bedgraph.gz 113.51 MB 2f1d4658db44855df0a3af049d05b1ac
Astro.CGN-both.bedgraph.gz.tbi 640.04 KB 89051f6b50a03c4dc970684e239547bd
genomic_resource.yaml 1.08 KB fe5529f55a62aeb88aaa484e5722c0c9
statistics/