Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Astro/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Astro cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Astro
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Astro_chn_mc float

zemke2023Conserved_Mouse_Astro_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Astro_chn_mc [0, 1]
n
2,484,834,749
mean
0.0116
sd
0.0141

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 248483474990.99% 47921013
chr1 186806750 95.57% 3632862
chr2 172368050 94.65% 3365944
chr3 151790150 94.85% 2946600
chr4 145741950 93.12% 2835028
chr5 142231600 93.68% 2767377
chr6 142135150 94.92% 2766087
chr7 133009300 91.45% 2572131
chr8 122057250 94.32% 2378396
chr9 118548400 95.15% 2321533
chr10 123573100 94.55% 2405683
chr11 116615000 95.52% 2290398
chr12 112726650 93.84% 2186865
chr13 113419750 94.19% 2204544
chr14 114002050 91.27% 2202437
chr15 98278750 94.46% 1914340
chr16 92399550 94.09% 1798356
chr17 89108600 93.81% 1733639
chr18 85385900 94.14% 1668311
chr19 57006200 92.80% 1116266
chrM 12699 77.91% 253
chrX 146422050 85.61% 2535780
chrY 21195850 23.10% 278183
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47921013 49 1000 51.85 50
global segment-length histogram

Files

Filename Size md5
Astro.CHN-both.bedgraph.gz 386.55 MB bb6fd66fd0428a71074d3b4b9f850169
Astro.CHN-both.bedgraph.gz.tbi 547.57 KB d20ea8609e1305fcd8ce385971ac42d9
genomic_resource.yaml 1.08 KB f6ab1faaec8a778790c0445ab9db23cc
statistics/