Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/CLA/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for CLA cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: CLA
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_CLA_cgn_mc float

zemke2023Conserved_Mouse_CLA_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_CLA_cgn_mc [0, 1]
n
329,332,899
mean
0.803
sd
0.376

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 32933289912.06% 5048703
chr1 23550700 12.05% 367083
chr2 24124450 13.25% 368860
chr3 18682050 11.67% 290670
chr4 20666950 13.21% 313586
chr5 21117600 13.91% 318644
chr6 18549000 12.39% 287797
chr7 18651500 12.82% 285576
chr8 17861650 13.80% 269247
chr9 17339800 13.92% 264129
chr10 17302750 13.24% 263389
chr11 18745400 15.35% 280465
chr12 14840650 12.35% 228989
chr13 15480150 12.85% 237686
chr14 14317000 11.46% 222878
chr15 13785050 13.25% 209775
chr16 11976550 12.20% 185600
chr17 13268700 13.97% 199547
chr18 11598600 12.79% 178429
chr19 8914350 14.51% 133257
chrM 6499 39.87% 78
chrX 7850250 4.59% 130869
chrY 703250 0.77% 12149
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 5048703 49 1600 65.23 50
global segment-length histogram

Files

Filename Size md5
CLA.CGN-both.bedgraph.gz 27.74 MB 8c52780c9dbc8b3ced437940d9c02460
CLA.CGN-both.bedgraph.gz.tbi 902.79 KB f413323a42460de9b8587d35a02f22af
genomic_resource.yaml 1.06 KB 210c4713aefc33e23621a2f68bc14f1f
statistics/