Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/CLA/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for CLA cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: CLA
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_CLA_chn_mc float

zemke2023Conserved_Mouse_CLA_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_CLA_chn_mc [0, 1]
n
1,300,696,299
mean
0.0293
sd
0.0816

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 130069629947.63% 13208728
chr1 100158850 51.24% 1030104
chr2 93699650 51.45% 956653
chr3 80039950 50.01% 806606
chr4 79078400 50.53% 811531
chr5 77165400 50.82% 783103
chr6 76359600 51.00% 774769
chr7 71990800 49.50% 707216
chr8 66347900 51.27% 683271
chr9 65468400 52.54% 675607
chr10 66102050 50.58% 664212
chr11 65744250 53.85% 681544
chr12 59840550 49.81% 609628
chr13 61001550 50.66% 616693
chr14 59798450 47.88% 610446
chr15 53134450 51.07% 549112
chr16 49211800 50.11% 500550
chr17 48403000 50.96% 481135
chr18 46273550 51.02% 478086
chr19 31528350 51.32% 324363
chrM 12399 76.07% 192
chrX 45546950 26.63% 432997
chrY 3790000 4.13% 30910
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 13208728 49 2250 98.47 50
global segment-length histogram

Files

Filename Size md5
CLA.CHN-both.bedgraph.gz 78.51 MB 257116d86cb214f6827246bb3c8ed6be
CLA.CHN-both.bedgraph.gz.tbi 477.5 KB 1ccd963153bd922bdf27abc64761aae8
genomic_resource.yaml 1.06 KB d5845fb0c0793fdabcf723819125a5ac
statistics/