Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/L23/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for L23 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: L23
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_L23_cgn_mc float

zemke2023Conserved_Mouse_L23_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_L23_cgn_mc [0, 1]
n
753,080,499
mean
0.8
sd
0.284

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75308049927.58% 14925066
chr1 53403250 27.32% 1058995
chr2 53443550 29.35% 1060349
chr3 43023900 26.88% 852757
chr4 45551500 29.10% 903689
chr5 46428250 30.58% 921324
chr6 41825950 27.93% 829377
chr7 41431200 28.49% 822042
chr8 39366150 30.42% 780986
chr9 37898450 30.42% 751985
chr10 38927800 29.79% 771937
chr11 39860100 32.65% 791231
chr12 33771250 28.11% 669787
chr13 34885800 28.97% 691455
chr14 32982150 26.41% 653663
chr15 30675900 29.48% 608717
chr16 27223900 27.72% 539914
chr17 29275200 30.82% 580598
chr18 25907850 28.56% 513837
chr19 19335300 31.47% 383775
chrM 6699 41.10% 133
chrX 32955300 19.27% 643409
chrY 4901050 5.34% 95106
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14925066 49 500 50.46 50
global segment-length histogram

Files

Filename Size md5
L23.CGN-both.bedgraph.gz 120.03 MB 0ad8bf344f0e67a59025c25a93eaa201
L23.CGN-both.bedgraph.gz.tbi 641.63 KB 40214a2d6cfb52df32d229ec284d650b
genomic_resource.yaml 1.06 KB 4108568646646c2f908792a781f4fc91
statistics/