Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/L23/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for L23 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: L23
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_L23_chn_mc float

zemke2023Conserved_Mouse_L23_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_L23_chn_mc [0, 1]
n
2,492,979,349
mean
0.0271
sd
0.0263

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 249297934991.29% 49402697
chr1 187123250 95.73% 3724338
chr2 172682250 94.82% 3436338
chr3 152101600 95.04% 3025175
chr4 146153700 93.38% 2901842
chr5 142576850 93.90% 2834329
chr6 142405850 95.10% 2832606
chr7 133728150 91.95% 2638820
chr8 122309000 94.52% 2432568
chr9 118725150 95.29% 2364332
chr10 123794850 94.72% 2463416
chr11 116754450 95.64% 2327265
chr12 112991200 94.06% 2242087
chr13 113642550 94.37% 2257706
chr14 114435700 91.62% 2270075
chr15 98435350 94.61% 1959821
chr16 92551400 94.24% 1841768
chr17 89286500 94.00% 1775148
chr18 85519500 94.29% 1702759
chr19 57092350 92.94% 1136581
chrM 12749 78.22% 253
chrX 147414400 86.19% 2876029
chrY 23242550 25.33% 359441
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49402697 49 800 50.46 50
global segment-length histogram

Files

Filename Size md5
L23.CHN-both.bedgraph.gz 414.09 MB 6a62876eca72a2f0298ebf6f2dbd902a
L23.CHN-both.bedgraph.gz.tbi 548.35 KB 0abc18a282242b482a244fbf711d4ca7
genomic_resource.yaml 1.06 KB 2e39f6c50d496214cb9c496e56ceb423
statistics/