Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/L4/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for L4 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: L4
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_L4_cgn_mc float

zemke2023Conserved_Mouse_L4_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_L4_cgn_mc [0, 1]
n
751,894,899
mean
0.807
sd
0.278

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75189489927.53% 14786240
chr1 53340000 27.29% 1049805
chr2 53392950 29.32% 1051397
chr3 42964100 26.85% 845244
chr4 45484350 29.06% 896143
chr5 46374900 30.54% 913594
chr6 41777850 27.90% 822735
chr7 41326250 28.41% 814473
chr8 39329150 30.39% 774716
chr9 37869350 30.39% 745913
chr10 38889000 29.76% 765424
chr11 39837450 32.63% 784882
chr12 33726750 28.08% 663638
chr13 34845950 28.94% 685270
chr14 32923850 26.36% 647124
chr15 30647700 29.46% 603245
chr16 27195900 27.69% 535125
chr17 29241200 30.78% 575517
chr18 25886100 28.54% 509433
chr19 19322800 31.45% 380543
chrM 6699 41.10% 133
chrX 32811700 19.18% 631480
chrY 4700900 5.12% 90406
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14786240 49 650 50.85 50
global segment-length histogram

Files

Filename Size md5
L4.CGN-both.bedgraph.gz 114.8 MB 1259c36b2aa7d5f07bc80a10e9e7011a
L4.CGN-both.bedgraph.gz.tbi 640.7 KB d920ec5e44ec789a13937ccb71d0b344
genomic_resource.yaml 1.06 KB b5bb46fcf2e35975562051a32e882bc2
statistics/