Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/L4/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for L4 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: L4
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_L4_chn_mc float

zemke2023Conserved_Mouse_L4_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_L4_chn_mc [0, 1]
n
2,488,425,499
mean
0.0252
sd
0.0255

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 248842549991.12% 49106400
chr1 186958750 95.64% 3710563
chr2 172507650 94.73% 3423700
chr3 151931450 94.93% 3012445
chr4 145915900 93.23% 2888444
chr5 142381650 93.77% 2823078
chr6 142255800 95.00% 2820981
chr7 133287800 91.64% 2620027
chr8 122176050 94.42% 2423479
chr9 118631300 95.21% 2356808
chr10 123675250 94.63% 2454608
chr11 116682550 95.58% 2321367
chr12 112848600 93.94% 2229838
chr13 113519400 94.27% 2247482
chr14 114183500 91.42% 2257474
chr15 98346800 94.52% 1952911
chr16 92474450 94.16% 1834948
chr17 89188300 93.90% 1767346
chr18 85451900 94.21% 1697392
chr19 57045000 92.86% 1132863
chrM 12549 76.99% 251
chrX 146846500 85.86% 2812379
chrY 22104350 24.09% 318016
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49106400 49 1200 50.67 50
global segment-length histogram

Files

Filename Size md5
L4.CHN-both.bedgraph.gz 407.71 MB f75e16266b943476a2d2ad13ca113cc2
L4.CHN-both.bedgraph.gz.tbi 549.56 KB 2842b361c156db9cd0d40fe311d560e2
genomic_resource.yaml 1.06 KB d50209eb75e64dd09280a4bd414a6834
statistics/