Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/L5-ET/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for L5-ET cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: L5-ET
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_L5-ET_cgn_mc float

zemke2023Conserved_Mouse_L5-ET_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_L5-ET_cgn_mc [0, 1]
n
715,070,049
mean
0.814
sd
0.317

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 71507004926.18% 11350755
chr1 51112950 26.15% 819052
chr2 51385600 28.22% 814849
chr3 41066100 25.66% 655541
chr4 43627000 27.88% 691420
chr5 44618600 29.39% 702133
chr6 40037800 26.74% 639951
chr7 39441900 27.12% 628634
chr8 37865250 29.26% 593972
chr9 36515100 29.31% 576415
chr10 37371100 28.59% 587316
chr11 38624100 31.64% 604349
chr12 32175400 26.78% 514798
chr13 33360450 27.70% 528633
chr14 31324900 25.08% 500293
chr15 29479200 28.33% 465930
chr16 26042750 26.52% 416631
chr17 28074150 29.56% 441906
chr18 24883950 27.43% 394599
chr19 18665000 30.38% 291194
chrM 6699 41.10% 130
chrX 26682750 15.60% 435563
chrY 2709300 2.95% 47446
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 11350755 49 1950 63 50
global segment-length histogram

Files

Filename Size md5
L5-ET.CGN-both.bedgraph.gz 66.78 MB 95dbe952db1acd47c4b8e3d38e152327
L5-ET.CGN-both.bedgraph.gz.tbi 636.05 KB 6fc4863818d37cfd6070bbcba393455b
genomic_resource.yaml 1.08 KB e819d8f8ce8fc69d9e110a387895c694
statistics/