Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/L5-IT/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for L5-IT cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: L5-IT
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_L5-IT_cgn_mc float

zemke2023Conserved_Mouse_L5-IT_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_L5-IT_cgn_mc [0, 1]
n
747,808,999
mean
0.819
sd
0.281

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74780899927.38% 13840484
chr1 53130950 27.18% 985456
chr2 53220300 29.22% 987128
chr3 42779400 26.73% 791169
chr4 45282450 28.93% 841330
chr5 46205300 30.43% 857418
chr6 41611650 27.79% 772538
chr7 41058750 28.23% 764731
chr8 39185950 30.28% 724916
chr9 37761800 30.31% 700055
chr10 38755150 29.65% 716053
chr11 39752750 32.56% 737767
chr12 33561450 27.94% 622858
chr13 34692750 28.81% 642218
chr14 32715700 26.19% 605126
chr15 30545000 29.36% 565924
chr16 27090750 27.59% 501909
chr17 29128750 30.67% 539380
chr18 25803650 28.45% 477289
chr19 19275300 31.38% 356511
chrM 6749 41.41% 135
chrX 32181850 18.82% 575456
chrY 4062600 4.43% 75117
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 13840484 49 1100 54.03 50
global segment-length histogram

Files

Filename Size md5
L5-IT.CGN-both.bedgraph.gz 94.91 MB 8613741b2f01c5e24dab9df40a7e8c76
L5-IT.CGN-both.bedgraph.gz.tbi 629.09 KB f29b790106e8132fbdb1119fb9c7cc07
genomic_resource.yaml 1.08 KB fc11f6bbcb0634e38a22fb72d0fbe142
statistics/