Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/L6-CT/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for L6-CT cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: L6-CT
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_L6-CT_cgn_mc float

zemke2023Conserved_Mouse_L6-CT_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_L6-CT_cgn_mc [0, 1]
n
750,345,899
mean
0.821
sd
0.274

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75034589927.48% 14481953
chr1 53260900 27.25% 1029210
chr2 53326750 29.28% 1031648
chr3 42893150 26.80% 827452
chr4 45406700 29.01% 879197
chr5 46308650 30.50% 895673
chr6 41713350 27.86% 806120
chr7 41218050 28.34% 798721
chr8 39276300 30.35% 759124
chr9 37825700 30.36% 731333
chr10 38839050 29.72% 749760
chr11 39807350 32.61% 770525
chr12 33666400 28.03% 650502
chr13 34787850 28.89% 671619
chr14 32840850 26.29% 633600
chr15 30607900 29.42% 591629
chr16 27156350 27.65% 524376
chr17 29203600 30.74% 564677
chr18 25855550 28.51% 499048
chr19 19305600 31.43% 373277
chrM 6699 41.10% 134
chrX 32601600 19.06% 610294
chrY 4437550 4.84% 84034
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14481953 49 700 51.81 50
global segment-length histogram

Files

Filename Size md5
L6-CT.CGN-both.bedgraph.gz 106.48 MB 844c3839c4384dd1dbd37e7e674f8798
L6-CT.CGN-both.bedgraph.gz.tbi 634.91 KB 490081f8839705c85965c78d6e3d85de
genomic_resource.yaml 1.08 KB 3cd32377ee9a00e522596ab5ec000a2d
statistics/