Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/L6-CT/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for L6-CT cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: L6-CT
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_L6-CT_chn_mc float

zemke2023Conserved_Mouse_L6-CT_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_L6-CT_chn_mc [0, 1]
n
2,482,925,999
mean
0.0259
sd
0.0278

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 248292599990.92% 48456950
chr1 186736250 95.53% 3678652
chr2 172297000 94.61% 3394239
chr3 151724250 94.80% 2983105
chr4 145647000 93.06% 2858309
chr5 142163550 93.63% 2798039
chr6 142065250 94.88% 2793659
chr7 132820900 91.32% 2575225
chr8 122009950 94.29% 2403054
chr9 118519550 95.12% 2337468
chr10 123528050 94.52% 2433336
chr11 116591950 95.50% 2306627
chr12 112647250 93.77% 2203035
chr13 113346850 94.12% 2221343
chr14 113898200 91.19% 2231776
chr15 98245300 94.43% 1937293
chr16 92359900 94.05% 1818733
chr17 89074450 93.78% 1745236
chr18 85364050 94.11% 1684250
chr19 56997650 92.78% 1122227
chrM 12549 76.99% 251
chrX 146139650 85.45% 2669033
chrY 20736450 22.60% 262060
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48456950 49 1200 51.24 50
global segment-length histogram

Files

Filename Size md5
L6-CT.CHN-both.bedgraph.gz 394.49 MB 0c566cffc629826a5433339c2e7f23cd
L6-CT.CHN-both.bedgraph.gz.tbi 548.28 KB 78c9c539ffab0c362cad38625f06e77e
genomic_resource.yaml 1.08 KB b76550f6626a3abd631c27e330001c4a
statistics/