Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/L6-IT/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for L6-IT cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: L6-IT
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_L6-IT_cgn_mc float

zemke2023Conserved_Mouse_L6-IT_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_L6-IT_cgn_mc [0, 1]
n
748,696,149
mean
0.817
sd
0.282

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74869614927.42% 14001628
chr1 53182850 27.21% 996741
chr2 53254250 29.24% 998047
chr3 42822250 26.76% 801026
chr4 45321850 28.96% 850293
chr5 46242900 30.46% 866493
chr6 41649400 27.82% 781276
chr7 41105950 28.26% 773242
chr8 39217750 30.31% 733314
chr9 37782500 30.32% 708108
chr10 38781250 29.67% 724470
chr11 39773250 32.58% 745094
chr12 33596350 27.97% 629763
chr13 34728500 28.84% 649060
chr14 32760350 26.23% 612751
chr15 30572450 29.38% 572375
chr16 27114150 27.61% 507937
chr17 29155250 30.69% 545375
chr18 25822950 28.47% 482449
chr19 19283350 31.39% 360934
chrM 6699 41.10% 134
chrX 32333600 18.91% 584676
chrY 4188300 4.57% 78070
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14001628 49 950 53.47 50
global segment-length histogram

Files

Filename Size md5
L6-IT.CGN-both.bedgraph.gz 97.91 MB 97304cbc69bbd2bc6ae74b6dc8febb76
L6-IT.CGN-both.bedgraph.gz.tbi 629.61 KB ab2a62a60a1b46980318121554fbebea
genomic_resource.yaml 1.08 KB 38cee3e0726a14cd265f4c26e4dc79db
statistics/