Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/L6b/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for L6b cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: L6b
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_L6b_cgn_mc float

zemke2023Conserved_Mouse_L6b_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_L6b_cgn_mc [0, 1]
n
632,246,099
mean
0.855
sd
0.305

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 63224609923.15% 9392967
chr1 45317250 23.18% 684463
chr2 45868300 25.19% 678084
chr3 36286850 22.67% 545462
chr4 38989350 24.91% 575164
chr5 39881100 26.27% 581523
chr6 35497850 23.71% 532259
chr7 35214200 24.21% 525545
chr8 33825950 26.14% 493158
chr9 32695950 26.24% 481665
chr10 33207200 25.41% 486968
chr11 34863900 28.56% 505991
chr12 28503250 23.73% 426346
chr13 29588250 24.57% 440026
chr14 27667250 22.15% 416193
chr15 26265200 25.24% 388396
chr16 23053600 23.47% 345552
chr17 25050750 26.37% 364008
chr18 22110900 24.38% 328774
chr19 16761100 27.28% 242411
chrM 6549 40.18% 122
chrX 19755150 11.55% 319325
chrY 1836200 2.00% 31532
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 9392967 49 2300 67.31 50
global segment-length histogram

Files

Filename Size md5
L6b.CGN-both.bedgraph.gz 52.39 MB 8098b804e37ff093b7cea212a344cd99
L6b.CGN-both.bedgraph.gz.tbi 672.72 KB e55f089c1bdd05d523740626403e0bd9
genomic_resource.yaml 1.06 KB 001eb5fd99fa7032f099d9fa2607e796
statistics/