Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/L6b/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for L6b cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: L6b
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_L6b_chn_mc float

zemke2023Conserved_Mouse_L6b_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_L6b_chn_mc [0, 1]
n
2,235,370,949
mean
0.0347
sd
0.067

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 223537094981.86% 28226636
chr1 170963750 87.46% 2190325
chr2 158490250 87.03% 2052217
chr3 138259000 86.39% 1753690
chr4 133399350 85.23% 1695367
chr5 130347250 85.85% 1672336
chr6 129951650 86.79% 1676981
chr7 120713500 83.00% 1449877
chr8 112027400 86.57% 1458220
chr9 109656200 88.01% 1430507
chr10 113001950 86.46% 1440121
chr11 108656650 89.00% 1427250
chr12 102350350 85.20% 1300306
chr13 103499150 85.95% 1305556
chr14 102919750 82.40% 1322328
chr15 90130450 86.63% 1142482
chr16 84330950 85.87% 1075076
chr17 81577600 85.88% 1004850
chr18 78394600 86.43% 1020943
chr19 52741650 85.85% 676023
chrM 12449 76.38% 240
chrX 104644050 61.18% 1063652
chrY 9303000 10.14% 68289
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28226636 49 3050 79.19 50
global segment-length histogram

Files

Filename Size md5
L6b.CHN-both.bedgraph.gz 182.46 MB 438d5f813e1f1cce2e46fbaf34508371
L6b.CHN-both.bedgraph.gz.tbi 509.32 KB 5088a38c7f6a24cdd18be6e8bae723eb
genomic_resource.yaml 1.06 KB eb8916ada6f71e6534ae305dbef6cd8a
statistics/