Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Lamp5/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Lamp5 cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Lamp5
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Lamp5_cgn_mc float

zemke2023Conserved_Mouse_Lamp5_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Lamp5_cgn_mc [0, 1]
n
738,857,349
mean
0.799
sd
0.297

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 73885734927.06% 12896311
chr1 52646450 26.93% 923467
chr2 52799350 28.99% 922354
chr3 42356650 26.47% 740253
chr4 44869200 28.67% 784078
chr5 45809400 30.17% 798591
chr6 41229650 27.53% 722553
chr7 40586300 27.91% 714309
chr8 38874100 30.04% 675272
chr9 37480450 30.08% 653613
chr10 38427150 29.40% 667727
chr11 39517050 32.37% 687534
chr12 33189800 27.63% 581753
chr13 34352650 28.53% 599221
chr14 32338250 25.89% 566081
chr15 30294800 29.12% 529925
chr16 26851550 27.34% 469447
chr17 28851350 30.37% 502496
chr18 25594700 28.22% 446205
chr19 19144150 31.16% 332596
chrM 6699 41.10% 128
chrX 30314450 17.72% 518841
chrY 3323200 3.62% 59867
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 12896311 49 1950 57.29 50
global segment-length histogram

Files

Filename Size md5
Lamp5.CGN-both.bedgraph.gz 81.26 MB 5d185dbf8941eaf3ce427869393b6f15
Lamp5.CGN-both.bedgraph.gz.tbi 627.98 KB c9993105e9f34a731824a462a034edab
genomic_resource.yaml 1.08 KB 915b3bdee1e00846cf534911dfae5125
statistics/